Van Itallie, E.S. et al. (2022) Dorsal lip maturation and initial archenteron extension depend on Wnt11 family ligands. Dev. Biol. 493, 67–79

Zhang, C.-H. et al. (2022) Creb5 coordinates synovial joint formation with the genesis of articular cartilage. Nat. Commun. 13, 7295

Park, H. et al. (2022) Spatial snapshots of amyloid precursor protein intramembrane processing via early endosome proteomics. Nat. Commun. 13, 6112

Skowyra, M.L. and Rapoport, T.A. (2022) PEX5 translocation into and out of peroxisomes drives matrix protein import. Mol. Cell DOI: 10.1016/j.molcel.2022.07.004

Budjan, C. et al. (2022) Paraxial mesoderm organoids model development of human somites. Elife, 11:e68925 DOI: 10.7554/eLife.68925

Jiang, H. et al. (2022) Enzymatic Analysis of WWP2 E3 Ubiquitin Ligase Using Protein Microarrays Identifies Autophagy-Related Substrates. J. Biol. Chem.

Sengupta, S. et al. (2022) GABA transmission from mAL interneurons regulates aggression in Drosophila males. Proc. Natl. Acad. Sci. U. S. A. 119,

Zhang, T. et al. (2022) Interrogating Kinase–Substrate Relationships with Proximity Labeling and Phosphorylation Enrichment. J. Proteome Res. DOI: 10.1021/acs.jproteome.1c00865

Cambra, H.M. et al. (2022) Triple-Decker sandwich cultures of intestinal organoids for long-term live imaging, uniform perturbation, and statistical sampling. Curr Protoc 2, e330

Iuchi, S. and Paulo, J.A. (2021) RNAmetasome network for macromolecule biogenesis in human cells. Commun Biol 4, 1399

Mills, E.L. et al. (2021) Cysteine 253 of UCP1 regulates energy expenditure and sex-dependent adipose tissue inflammation. Cell Metab. DOI: 10.1016/j.cmet.2021.11.003

Ordureau, A. et al. (2021) Temporal proteomics during neurogenesis reveals large-scale proteome and organelle remodeling via selective autophagy. Mol. Cell DOI: 10.1016/j.molcel.2021.10.001

Wang, H., Qi, W., Zou, C. et al. NEK1-mediated retromer trafficking promotes blood–brain barrier integrity by regulating glucose metabolism and RIPK1 activation. Nat Commun 12, 4826 (2021). https://doi.org/10.1038/s41467-021-25157-7

Zaganjor, E. et al. (2021) SIRT4 is an early regulator of branched-chain amino acid catabolism that promotes adipogenesis. Cell Rep. 36, 109345

Tye, B.W. and Churchman, L.S. (2021) Hsf1 activation by proteotoxic stress requires concurrent protein synthesis. Mol. Biol. Cell

Quan, Y. et al. (2021) Ctf3/CENP-I provides a docking site for the desumoylase Ulp2 at the kinetochore. J. Cell Biol. 220,

Mills, E.L. et al. (2021) UCP1 governs liver extracellular succinate and inflammatory pathogenesis. Nat Metab DOI: 10.1038/s42255-021-00389-5

Yoo, T.Y. and Mitchison, T.J. (2021) O-GlcNAc modification of nuclear pore complexes accelerates bidirectional transport. J. Cell Biol. 220.

Sun, Y. et al. (2021) Mitochondrial TNAP controls thermogenesis by hydrolysis of phosphocreatine. Nature DOI: 10.1038/s41586-021-03533-z

Bennett, C.F. et al. (2021) Peroxisomal-derived ether phospholipids link nucleotides to respirasome assembly. Nat. Chem. Biol. DOI: 10.1038/s41589-021-00772-z

Horio, N. and Liberles, S.D. (2021) Hunger enhances food-odour attraction through a neuropeptide Y spotlight. NatureDOI: 10.1038/s41586-021-03299-4

Altenburg, W.J. et al. (2021) Exploring targeting peptide-shell interactions in encapsulin nanocompartments. Sci. Rep. 11, 4951

Harden, T.T. et al. 25-Feb-(2021) , Defining kinetic roles of transcriptional activators in the early Drosophila embryo. , Cold Spring Harbor Laboratory, 2021.02.25.432925

Wang, N. et al. (2021) Mechanism of membrane-curvature generation by ER-tubule shaping proteins. Nat. Commun. 12, 568

Quan, Y. et al. 01-Jan-(2021) , The structural basis for Ulp2 recruitment to the kinetochore., Cold Spring Harbor Laboratory, 2020.12.30.424835

Sever, N. et al. (2021) Mechanism of Lamellar Body Formation by Lung Surfactant Protein B. Mol. Cell 81, 49–66.e8

McKenna, M.J. et al. (2020) The endoplasmic reticulum P5A-ATPase is a transmembrane helix dislocase. Science 369,

Ma, W. et al. (2020) Single-molecule dynamics of Dishevelled at the plasma membrane and Wnt pathway activation. Proc. Natl. Acad. Sci. U. S. A. 117, 16690–16701

Liu, X. et al. (2020) Computationally enhanced quantitative phase microscopy reveals autonomous oscillations in mammalian cell growth. Proc. Natl. Acad. Sci. U. S. A. 117, 27388–27399

An, H. et al. (2020) Systematic quantitative analysis of ribosome inventory during nutrient stress. Nature 583, 303–309

Zhang, C. et al. (2020) Area Postrema Cell Types that Mediate Nausea-Associated Behaviors. Neuron DOI: 10.1016/j.neuron.2020.11.010

Hinshaw, S.M. and Harrison, S.C. (2020) The Structural Basis for Kinetochore Stabilization by Cnn1/CENP-T. Curr. Biol.30, 3425–3431.e3

Reddy, A. et al. (2020) pH-Gated Succinate Secretion Regulates Muscle Remodeling in Response to Exercise. Cell DOI: 10.1016/j.cell.2020.08.039

Yoon, H. et al. (2020) PHD3 Loss Promotes Exercise Capacity and Fat Oxidation in Skeletal Muscle. Cell Metab. DOI: 10.1016/j.cmet.2020.06.017

Fu, Accalia, Juan Carlos Alvarez-Perez, Daina Avizonis, Tatsuya Kin, Scott B. Ficarro, Dong Wook Choi, Esra Karakose, et al. 2020. “Glucose-Dependent Partitioning of Arginine to the Urea Cycle Protects β-Cells from Inflammation.” Nature Metabolism, May. https://doi.org/10.1038/s42255-020-0199-4.

Rosenbluth, Jennifer M., Ron C. J. Schackmann, G. Kenneth Gray, Laura M. Selfors, Carman Man-Chung Li, Mackenzie Boedicker, Hendrik J. Kuiken, et al. 2020. “Organoid Cultures from Normal and Cancer-Prone Human Breast Tissues Preserve Complex Epithelial Lineages.” Nature Communications 11 (1): 1711.

Lee, I-Ju, Ema Stokasimov, Nathaniel Dempsey, Joseph M. Varberg, Etai Jacob, Sue L. Jaspersen, and David Pellman. 2020. “Factors Promoting Nuclear Envelope Assembly Independent of the Canonical ESCRT Pathway.” The Journal of Cell Biology 219 (6). https://doi.org/10.1083/jcb.201908232.

McNeill, Elizabeth M., Cheryl Thompson, Brett Berke, Vivian T. Chou, Jannette Rusch, April Duckworth, Jamin DeProto, et al. 2020. “Drosophila Enabled Promotes Synapse Morphogenesis and Regulates Active Zone Form and Function.” Neural Development 15 (1): 4.

Richeson, Katherine V., Tatyana Bodrug, Katharine L. Sackton, Masaya Yamaguchi, Joao A. Paulo, Steven P. Gygi, Brenda A. Schulman, Nicholas G. Brown, and Randall W. King. 2020. “Paradoxical Mitotic Exit Induced by a Small Molecule Inhibitor of APC/CCdc20.” Nature Chemical Biology, March. https://doi.org/10.1038/s41589-020-0495-z.

Sivakumaren, Sindhu Carmen, Hyeseok Shim, Tinghu Zhang, Fleur M. Ferguson, Mark R. Lundquist, Christopher M. Browne, Hyuk-Soo Seo, et al. 2020. “Targeting the PI5P4K Lipid Kinase Family in Cancer Using Covalent Inhibitors.” Cell Chemical Biology, March. https://doi.org/10.1016/j.chembiol.2020.02.003.

Chou, Vivian T., Seth Johnson, Jennifer Long, Maxime Vounatsos, and David Van Vactor. 2020. “dTACC Restricts Bouton Addition and Regulates Microtubule Organization at the Drosophila Neuromuscular Junction.” Cytoskeleton 77 (1-2): 4–15.

Hu, Bo, Chengcheng Jin, Xing Zeng, Jon M. Resch, Mark P. Jedrychowski, Zongfang Yang, Bhavna N. Desai, et al. 2020. “γδ T Cells and Adipocyte IL-17RC Control Fat Innervation and Thermogenesis.” Nature 578 (7796): 610–14.

Ordureau, Alban, Joao A. Paulo, Jiuchun Zhang, Heeseon An, Kirby N. Swatek, Joe R. Cannon, Qiaoqiao Wan, David Komander, and J. Wade Harper. 2020. “Global Landscape and Dynamics of Parkin and USP30-Dependent Ubiquitylomes in iNeurons during Mitophagic Signaling.” Molecular Cell 77 (5): 1124–42.e10.

Sivakumaren, Sindhu Carmen, Hyeseok Shim, Tinghu Zhang, Fleur M. Ferguson, Mark R. Lundquist, Christopher M. Browne, Hyuk-Soo Seo, et al. 2020. “Targeting the PI5P4K Lipid Kinase Family in Cancer Using Covalent Inhibitors.” Cell Chemical Biology, March. https://doi.org/10.1016/j.chembiol.2020.02.003.

McNeill, Elizabeth M., Chloe Warinner, Stephen Alkins, Alicia Taylor, Hansine Heggeness, Todd F. DeLuca, Tudor A. Fulga, Dennis P. Wall, Leslie C. Griffith, and David Van Vactor. 2020. “The Conserved microRNA miR-34 Regulates Synaptogenesis via Coordination of Distinct Mechanisms in Presynaptic and Postsynaptic Cells.” Nature Communications 11 (1): 1092.

Luo, Chi, Eduardo Balsa, Elizabeth A. Perry, Jiaxin Liang, Clint D. Tavares, Francisca Vazquez, Hans R. Widlund, and Pere Puigserver. 2020. “H3K27me3-Mediated PGC1α Gene Silencing Promotes Melanoma Invasion through WNT5A and YAP.” The Journal of Clinical Investigation, January. https://doi.org/10.1172/JCI130038.

Iglesias, N. et al. (2020) Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance. Mol. Cell 77, 51–66.e8

Hinshaw, Stephen M., Andrew N. Dates, and Stephen C. Harrison. 2019. “The Structure of the Yeast Ctf3 Complex.” eLife 8 (June). https://doi.org/10.7554/eLife.48215.

Scholes, Clarissa, Kelly M. Biette, Timothy T. Harden, and Angela H. DePace. 2019. “Signal Integration by Shadow Enhancers and Enhancer Duplications Varies across the Drosophila Embryo.” Cell Reports 26 (9): 2407–18.e5.

Joseph P. Dexter, Sudhakaran Prabakaran, Jeremy Gunawardena. “A Complex Hierarchy of Avoidance Behaviors in a Single-Cell Eukaryote”. 2019. Current Biology 29. doi.org/10.1016/j.cub.2019.10.059

Zhewang Lin, Ivana Gasic, Viswanathan Chandrasekaran, Niklas Peters, Sichen Shao, Timothy J. Mitchison, Ramanujan S. Hegde. “TTC5 mediates autoregulation of tubulin via mRNA degradation”. 2019. Science 14. DOI: 10.1126/science.aaz4352

Jin-Mi Heo, Nathan J. Harper, Joao A. Paulo, Mamie Li, Qikai Xu, Margaret Coughlin, Stephen J. Elledge and J. Wade Harper. 2019. “Integrated proteogenetic analysis reveals the landscape of a mitochondrial-autophagosome synapse during PARK2-dependent mitophagy”. Science Advances 06 Nov: Vol. 5, no. 11. DOI: 10.1126/sciadv.aay4624

Sha, Zhe, Tamara Blyszcz, Román González-Prieto, Alfred C. O. Vertegaal, and Alfred L. Goldberg. 2019. “Inhibiting Ubiquitination Causes an Accumulation of SUMOylated Newly Synthesized Nuclear Proteins at PML Bodies.” The Journal of Biological Chemistry, July. https://doi.org/10.1074/jbc.RA119.009147.

An, Heeseon, Alban Ordureau, Joao A. Paulo, Christopher J. Shoemaker, Vladimir Denic, and J. Wade Harper. 2019. “TEX264 Is an Endoplasmic Reticulum-Resident ATG8-Interacting Protein Critical for ER Remodeling during Nutrient Stress.” Molecular Cell, April. https://doi.org/10.1016/j.molcel.2019.03.034.

Catipovic, Marco A., Benedikt W. Bauer, Joseph J. Loparo, and Tom A. Rapoport. 2019. “Protein Translocation by the SecA ATPase Occurs by a Power‐stroke Mechanism.” The EMBO Journal, March, e101140.

Field, C. M., J. F. Pelletier, and T. Mitchison. 2019. “Disassembly of Actin and Keratin Networks by Aurora B Kinase at the Midplane of Cleaving Xenopus Laevis Eggs.” bioRxiv. https://www.biorxiv.org/content/early/2019/01/06/513200.abstract.

Florian, Stefan, Yoshiko Iwamoto, Margaret Coughlin, Ralph Weissleder, and Timothy J. Mitchison. 2019. “A Human Organoid System That Self-Organizes to Recapitulate Growth and Differentiation of a Benign Mammary Tumor.” Proceedings of the National Academy of Sciences of the United States of America, May. https://doi.org/10.1073/pnas.1702372116.

Romano, Fabian B., Neil B. Blok, and Tom A. Rapoport. 2019. “Peroxisome Protein Import Recapitulated in Xenopus Egg Extracts.” The Journal of Cell Biology, April. https://doi.org/10.1083/jcb.201901152.

Tye, Blake W., Nicoletta Commins, Lillia V. Ryazanova, Martin Wühr, Michael Springer, David Pincus, and L. Stirling Churchman. 2019. “Proteotoxicity from Aberrant Ribosome Biogenesis Compromises Cell Fitness.” eLife8 (March). https://doi.org/10.7554/eLife.43002.

Wang, Songyu, Fabian B. Romano, and Tom A. Rapoport. 2019. “Endoplasmic Reticulum Network Formation with Xenopus Egg Extracts.” Cold Spring Harbor Protocols 2019 (2): db.prot097204.

Zeng, Xing, Mengchen Ye, Jon M. Resch, Mark P. Jedrychowski, Bo Hu, Bradford B. Lowell, David D. Ginty, and Bruce M. Spiegelman. 2019. “Innervation of Thermogenic Adipose Tissue via a Calsyntenin 3β-S100b Axis.” Nature, May. https://doi.org/10.1038/s41586-019-1156-9.